Variant report

Variant	rs9968436
Chromosome Location	chr4:151473806-151473807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10003085	0.85[AMR][1000 genomes]
rs10009219	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10027582	0.83[ASN][1000 genomes]
rs10213297	0.81[ASN][1000 genomes]
rs11099767	0.81[ASN][1000 genomes]
rs11099768	0.85[AMR][1000 genomes]
rs12500679	0.82[ASN][1000 genomes]
rs17026968	0.82[ASN][1000 genomes]
rs28367335	0.81[ASN][1000 genomes]
rs28405183	0.82[ASN][1000 genomes]
rs28447376	0.82[ASN][1000 genomes]
rs28580527	0.81[ASN][1000 genomes]
rs28797934	0.85[AMR][1000 genomes]
rs3922785	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61655905	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6813081	0.83[ASN][1000 genomes]
rs6843987	0.81[ASN][1000 genomes]
rs6847441	0.85[ASN][1000 genomes]
rs72957852	0.81[ASN][1000 genomes]
rs72957869	0.83[ASN][1000 genomes]
rs72957890	0.88[ASN][1000 genomes]
rs72959804	0.81[ASN][1000 genomes]
rs7659148	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7674390	0.82[ASN][1000 genomes]
rs7691319	0.81[ASN][1000 genomes]
rs7691594	0.81[ASN][1000 genomes]
rs7699621	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7699721	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9307878	0.81[ASN][1000 genomes]
rs9761873	0.81[ASN][1000 genomes]
rs9968356	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151422800-151474600	Weak transcription	Primary B cells from cord blood	blood
2	chr4:151453200-151474600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:151460000-151474600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:151462200-151474600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:151468800-151474600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:151469600-151474800	Weak transcription	K562	blood
7	chr4:151470400-151503600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:151471200-151474600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:151471400-151474200	Weak transcription	Esophagus	oesophagus
10	chr4:151471400-151474600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:151471600-151474000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:151472000-151483000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:151472000-151490000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:151472000-151501400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:151472600-151475000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:151472600-151475600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:151472600-151500200	Weak transcription	Aorta	Aorta
18	chr4:151473200-151475600	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr4:151473200-151484000	Weak transcription	Fetal Kidney	kidney
20	chr4:151473400-151474600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:151473400-151486000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:151473400-151491200	Weak transcription	Ovary	ovary
23	chr4:151473600-151474600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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