The 2.0 version of rSNPBase

Variant report

Variant rs9968571
Chromosome Location chr5:114959009-114959010
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:114938200-114960200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr5:114938600-114960000 Weak transcription H9 Cell Line embryonic stem cell
3 chr5:114938800-114960000 Weak transcription Lung lung
4 chr5:114939000-114959200 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr5:114939000-114960200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr5:114941000-114959400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr5:114946000-114959400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:114946200-114959400 Strong transcription Fetal Thymus thymus
9 chr5:114952400-114959200 Weak transcription Brain Germinal Matrix brain
10 chr5:114952400-114959400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr5:114952400-114960200 Weak transcription Esophagus oesophagus
12 chr5:114954400-114960200 Weak transcription Fetal Muscle Trunk muscle
13 chr5:114955400-114959400 Weak transcription Fetal Kidney kidney
14 chr5:114956400-114959400 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr5:114956400-114960000 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr5:114956400-114960200 Weak transcription H1 Cell Line embryonic stem cell
17 chr5:114956600-114959400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:114956600-114959600 Transcr. at gene 5' and 3' GM12878-XiMat blood
19 chr5:114956600-114959800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr5:114956800-114960000 Enhancers Fetal Adrenal Gland Adrenal Gland
21 chr5:114957000-114959200 Enhancers HUVEC blood vessel
22 chr5:114957000-114959400 Enhancers Brain Hippocampus Middle brain
23 chr5:114957200-114959200 Enhancers Small Intestine intestine
24 chr5:114957200-114959600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
25 chr5:114957200-114960000 Enhancers Fetal Brain Male brain
26 chr5:114957200-114960000 Enhancers Sigmoid Colon Sigmoid Colon
27 chr5:114957200-114960000 Enhancers Skeletal Muscle Female skeletal muscle
28 chr5:114957400-114959400 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr5:114957400-114959400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr5:114957400-114959400 Enhancers Pancreas Pancrea
31 chr5:114957400-114959600 Enhancers Adipose Nuclei Adipose
32 chr5:114957400-114960200 Enhancers Cortex derived primary cultured neurospheres brain
33 chr5:114957400-114960400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr5:114957600-114959400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr5:114957600-114960000 Weak transcription Gastric stomach
36 chr5:114957800-114959800 Enhancers Fetal Intestine Small intestine
37 chr5:114958000-114959200 Genic enhancers Fetal Muscle Leg muscle
38 chr5:114958000-114959200 Enhancers HSMM muscle
39 chr5:114958000-114959200 Genic enhancers NHDF-Ad bronchial
40 chr5:114958000-114959200 Genic enhancers Osteobl bone
41 chr5:114958000-114959400 Enhancers Duodenum Smooth Muscle Duodenum
42 chr5:114958000-114959400 Enhancers Stomach Smooth Muscle stomach
43 chr5:114958000-114959400 Genic enhancers NHEK skin
44 chr5:114958000-114959800 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
45 chr5:114958000-114960000 Enhancers Primary T helper naive cells fromperipheralblood blood
46 chr5:114958000-114960000 Enhancers Brain Cingulate Gyrus brain
47 chr5:114958000-114960200 Enhancers Primary T helper 17 cells PMA-I stimulated --
48 chr5:114958000-114960200 Enhancers Ovary ovary
49 chr5:114958000-114960200 Transcr. at gene 5' and 3' Dnd41 blood
50 chr5:114958000-114960400 Enhancers Fetal Heart heart

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Last update: Aug 31, 2015