Variant report

Variant	rs9968787
Chromosome Location	chr6:39370257-39370258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28744439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4142118	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs59974812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915826	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929345	1.00[AMR][1000 genomes]
rs6930845	1.00[EUR][1000 genomes]
rs7751124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39367600-39371600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:39368200-39370600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:39368400-39371000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:39368400-39371400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:39368400-39371400	Enhancers	Adipose Nuclei	Adipose
6	chr6:39368600-39371200	Enhancers	NHDF-Ad	bronchial
7	chr6:39368600-39371400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:39368600-39371600	Enhancers	Brain Substantia Nigra	brain
9	chr6:39368800-39370600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:39369200-39370600	Enhancers	Placenta	Placenta
11	chr6:39369400-39370400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:39369400-39371400	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:39369600-39371400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:39369800-39370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:39370000-39370800	Enhancers	Brain Anterior Caudate	brain
16	chr6:39370000-39375200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:39370200-39370400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:39370200-39370400	Flanking Active TSS	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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