Variant report

Variant	rs996953
Chromosome Location	chr11:16284189-16284190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10766307	1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4601732	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5010561	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3414577	chr11:16270425-16298158	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16271400-16289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16271800-16286400	Weak transcription	Psoas Muscle	Psoas
3	chr11:16279600-16300400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16283600-16284400	Enhancers	Fetal Intestine Small	intestine
5	chr11:16283600-16284400	Enhancers	A549	lung
6	chr11:16283600-16284400	Flanking Active TSS	HepG2	liver
7	chr11:16283600-16284600	Enhancers	Fetal Intestine Large	intestine
8	chr11:16283600-16284600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:16283600-16285000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16283600-16285200	Enhancers	Liver	Liver
11	chr11:16283800-16285200	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:16283800-16285200	Enhancers	Fetal Heart	heart
13	chr11:16284000-16284600	Enhancers	Fetal Lung	lung
14	chr11:16284000-16285000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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