Variant report

Variant	rs9970755
Chromosome Location	chr1:220510703-220510704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220503462..220505914-chr1:220509183..220511550,3	MCF-7	breast:
2	chr1:220505070..220506632-chr1:220508867..220511309,2	MCF-7	breast:
3	chr1:220509893..220511570-chr1:220536050..220537771,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10863544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118515	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs11118525	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118531	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067541	0.91[ASN][1000 genomes]
rs12075594	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077296	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087896	0.91[ASN][1000 genomes]
rs12089334	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093982	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12097735	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12568195	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567955	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657633	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925445	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220500600-220510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:220508600-220511400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:220508800-220511400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:220508800-220511400	Enhancers	HMEC	breast
5	chr1:220509000-220511000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:220509000-220511200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:220509200-220511400	Enhancers	NHEK	skin
8	chr1:220509400-220510800	Weak transcription	Esophagus	oesophagus
9	chr1:220509400-220512000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:220509400-220512000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:220509600-220512000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:220509600-220512000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:220509600-220512000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:220509800-220510800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr1:220509800-220511400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:220510000-220510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:220510000-220511000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:220510000-220513200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:220510400-220511200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:220510400-220511400	Enhancers	Placenta	Placenta
21	chr1:220510600-220510800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:220510600-220510800	Enhancers	K562	blood
23	chr1:220510600-220511000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:220510600-220511200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr1:220510600-220511400	Enhancers	Hela-S3	cervix
26	chr1:220510600-220513200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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