Variant report

Variant	rs9971390
Chromosome Location	chr11:108766908-108766909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11212761	1.00[AMR][1000 genomes]
rs11212801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2761707	chr11:108763836-108772204	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108760800-108767800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108761800-108767000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:108762000-108767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:108764800-108767600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:108764800-108768000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:108764800-108768200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:108765000-108768000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:108765000-108768400	Enhancers	Hela-S3	cervix
12	chr11:108765600-108768600	Weak transcription	K562	blood
13	chr11:108765800-108768000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:108765800-108768800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:108766000-108767000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:108766000-108768200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:108766000-108768400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:108766200-108767000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:108766200-108767000	Active TSS	A549	lung
20	chr11:108766200-108767400	Flanking Active TSS	HUVEC	blood vessel
21	chr11:108766200-108768800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:108766400-108767000	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:108766400-108767200	Flanking Active TSS	Osteobl	bone
24	chr11:108766400-108767400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:108766400-108767400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:108766400-108768000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:108766400-108768000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:108766400-108768200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:108766400-108768400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:108766600-108767000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:108766600-108767000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:108766600-108767000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr11:108766600-108767000	Active TSS	Adipose Nuclei	Adipose
34	chr11:108766600-108767000	Enhancers	HSMMtube	muscle
35	chr11:108766600-108767200	Enhancers	Primary B cells from cord blood	blood
36	chr11:108766600-108767200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:108766600-108767200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:108766600-108767200	Flanking Active TSS	HMEC	breast
39	chr11:108766600-108767400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:108766600-108767400	ZNF genes & repeats	GM12878-XiMat	blood
41	chr11:108766600-108767400	Enhancers	NHDF-Ad	bronchial
42	chr11:108766600-108767600	Enhancers	HSMM	muscle
43	chr11:108766600-108767600	Flanking Active TSS	NH-A	brain
44	chr11:108766600-108775600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:108766800-108767000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:108766800-108767000	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr11:108766800-108767000	Enhancers	Primary hematopoietic stem cells	blood
48	chr11:108766800-108767000	Flanking Active TSS	NHEK	skin
49	chr11:108766800-108767400	Enhancers	Stomach Mucosa	stomach
50	chr11:108766800-108768000	Enhancers	NHLF	lung

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