Variant report

Variant	rs997156
Chromosome Location	chr2:31870558-31870559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs28382989	0.87[EUR][1000 genomes]
rs28382991	0.87[EUR][1000 genomes]
rs28383000	0.87[EUR][1000 genomes]
rs28383006	0.87[EUR][1000 genomes]
rs28383029	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383033	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383035	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383053	0.87[EUR][1000 genomes]
rs28383056	0.87[EUR][1000 genomes]
rs28383057	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383058	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383061	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383083	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28383086	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28745286	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28745292	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs435539	1.00[ASN][1000 genomes]
rs58203711	0.87[EUR][1000 genomes]
rs72794644	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv961024	chr2:31814613-31870845	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31861000-31873600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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