Variant report

Variant	rs9972348
Chromosome Location	chr15:56185262-56185263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12442185	0.97[ASN][1000 genomes]
rs12902644	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17819300	0.85[JPT][hapmap]
rs4774833	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7174459	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56166000-56185400	Weak transcription	Hela-S3	cervix
2	chr15:56172000-56186200	Weak transcription	Osteobl	bone
3	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
4	chr15:56175200-56186000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:56175400-56186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:56175600-56186200	Weak transcription	NHEK	skin
7	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
9	chr15:56176800-56186800	Weak transcription	NH-A	brain
10	chr15:56181600-56186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:56181600-56186600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:56181800-56186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:56181800-56188800	Weak transcription	HMEC	breast
14	chr15:56184400-56186200	Weak transcription	Psoas Muscle	Psoas
15	chr15:56184800-56185400	Strong transcription	HSMM	muscle
16	chr15:56185000-56185600	Flanking Active TSS	A549	lung
17	chr15:56185000-56186600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:56185000-56189600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:56185200-56187800	Active TSS	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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