Variant report

Variant	rs997310
Chromosome Location	chr8:129920280-129920281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10106147	0.86[ASN][1000 genomes]
rs10106833	0.82[ASN][1000 genomes]
rs10111925	0.86[ASN][1000 genomes]
rs10112267	0.86[ASN][1000 genomes]
rs12548659	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266917	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13275797	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519841	0.85[AFR][1000 genomes]
rs1589258	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16903837	0.86[ASN][1000 genomes]
rs2028518	0.93[EUR][1000 genomes]
rs2165598	0.86[ASN][1000 genomes]
rs28603306	0.82[ASN][1000 genomes]
rs28686180	0.86[ASN][1000 genomes]
rs34682967	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35491248	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826703	0.81[AFR][1000 genomes]
rs987525	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs997310	TMEM55A	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129913400-129922200	Weak transcription	Dnd41	blood
2	chr8:129918000-129922800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129918800-129921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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