Variant report

Variant	rs997357
Chromosome Location	chr2:142891872-142891873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10496915	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs10928136	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs11904731	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs12328773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349223	0.87[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs1449486	0.81[ASN][1000 genomes]
rs1449487	0.80[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs17831833	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6754088	0.80[ASN][1000 genomes]
rs969990	0.91[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv875254	chr2:142833327-142931146	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006247	chr2:142851056-143289465	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142889200-142900800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142889800-142892400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:142889800-142892400	Weak transcription	Brain Angular Gyrus	brain
4	chr2:142889800-142892600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:142890000-142892400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:142890800-142892400	Weak transcription	Brain Substantia Nigra	brain
7	chr2:142891000-142892400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:142891200-142892400	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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