Variant report

Variant	rs9976096
Chromosome Location	chr21:16062145-16062146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7282220	1.00[CEU][hapmap]
rs9974572	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16059400-16063400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr21:16059800-16063200	Weak transcription	Dnd41	blood
3	chr21:16060200-16066400	Weak transcription	K562	blood
4	chr21:16060400-16063200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr21:16060400-16064400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr21:16060600-16063200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr21:16060800-16063600	Weak transcription	Primary B cells from cord blood	blood
8	chr21:16061200-16062800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr21:16061200-16062800	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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