Variant report
| Variant | rs9977437 |
|---|---|
| Chromosome Location | chr21:28433917-28433918 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10222074 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12329903 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12627068 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12627643 | 0.84[ASN][1000 genomes] |
| rs1888429 | 0.81[ASN][1000 genomes] |
| rs2088379 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs233589 | 1.00[ASN][1000 genomes] |
| rs233591 | 1.00[ASN][1000 genomes] |
| rs233592 | 1.00[ASN][1000 genomes] |
| rs233596 | 1.00[ASN][1000 genomes] |
| rs2830635 | 0.92[EUR][1000 genomes] |
| rs2830657 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2830661 | 0.87[ASN][1000 genomes] |
| rs28479869 | 0.88[EUR][1000 genomes] |
| rs28544020 | 0.82[ASN][1000 genomes] |
| rs28597803 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34676567 | 0.92[EUR][1000 genomes] |
| rs7276086 | 0.81[ASN][1000 genomes] |
| rs9305300 | 0.82[ASN][1000 genomes] |
| rs9647125 | 0.81[ASN][1000 genomes] |
| rs9647126 | 0.81[ASN][1000 genomes] |
| rs9647127 | 0.82[ASN][1000 genomes] |
| rs9974419 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9979644 | 0.94[EUR][1000 genomes] |
| rs9981498 | 0.92[EUR][1000 genomes] |
| rs9981850 | 0.84[ASN][1000 genomes] |
| rs9984716 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2758532 | chr21:28380230-28540443 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | esv2758817 | chr21:28380230-28540443 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28433000-28434000 | Weak transcription | Hela-S3 | cervix |
| 2 | chr21:28433200-28434800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
