The 2.0 version of rSNPBase

Variant report

Variant rs9977542
Chromosome Location chr21:40144567-40144568
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:40128200-40144600 Weak transcription Hela-S3 cervix
2 chr21:40132600-40144800 Weak transcription Aorta Aorta
3 chr21:40132600-40144800 Weak transcription Ovary ovary
4 chr21:40139200-40145000 Weak transcription Esophagus oesophagus
5 chr21:40139200-40146400 Weak transcription Lung lung
6 chr21:40139400-40145000 Weak transcription Left Ventricle heart
7 chr21:40139600-40144800 Weak transcription HMEC breast
8 chr21:40139600-40145000 Weak transcription Colonic Mucosa Colon
9 chr21:40139600-40145000 Weak transcription Right Atrium heart
10 chr21:40139600-40145000 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr21:40139600-40145400 Enhancers Fetal Intestine Large intestine
12 chr21:40139600-40145600 Enhancers Fetal Intestine Small intestine
13 chr21:40139800-40144600 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr21:40139800-40144800 Weak transcription Adipose Nuclei Adipose
15 chr21:40140000-40144800 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr21:40140000-40144800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr21:40140000-40145000 Weak transcription Primary hematopoietic stem cells blood
18 chr21:40140600-40144600 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr21:40140600-40144800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr21:40140600-40145000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr21:40141000-40144600 Weak transcription NHEK skin
22 chr21:40141000-40144800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr21:40141000-40144800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr21:40141000-40145000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr21:40141200-40144600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr21:40141200-40144600 Weak transcription HSMM muscle
27 chr21:40141400-40144800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr21:40141400-40144800 Weak transcription GM12878-XiMat blood
29 chr21:40141400-40145600 Enhancers NHLF lung
30 chr21:40141400-40147400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr21:40141600-40149200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr21:40141800-40144800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr21:40141800-40144800 Weak transcription Placenta Placenta
34 chr21:40141800-40145000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr21:40141800-40145000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr21:40141800-40145000 Weak transcription Fetal Thymus thymus
37 chr21:40141800-40145200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr21:40142000-40144600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr21:40142000-40144800 Weak transcription NH-A brain
40 chr21:40142000-40149200 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr21:40142200-40144800 Weak transcription Osteobl bone
42 chr21:40142800-40144600 Weak transcription Fetal Lung lung
43 chr21:40142800-40145000 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr21:40142800-40150600 Weak transcription Stomach Smooth Muscle stomach
45 chr21:40143000-40144800 Weak transcription Fetal Stomach stomach
46 chr21:40143000-40146000 Enhancers Small Intestine intestine
47 chr21:40143400-40144800 Weak transcription HSMMtube muscle
48 chr21:40143400-40145000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr21:40143400-40145000 Weak transcription Stomach Mucosa stomach
50 chr21:40143600-40147800 Enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015