Variant report

Variant	rs9979005
Chromosome Location	chr21:46124563-46124564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1296489	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2838652	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs743501	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs762437	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9978300	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9978396	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv913956	chr21:46096964-46279505	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1062245	chr21:46096964-46332587	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv544478	chr21:46096964-46332587	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46121400-46125200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr21:46122800-46129400	Weak transcription	Right Atrium	heart
3	chr21:46123200-46124600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr21:46123400-46124600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr21:46123800-46124800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr21:46123800-46124800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
7	chr21:46124000-46124800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr21:46124000-46124800	Bivalent Enhancer	HepG2	liver
9	chr21:46124200-46124800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
10	chr21:46124200-46124800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr21:46124200-46124800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr21:46124200-46125000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr21:46124400-46124600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
14	chr21:46124400-46124600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr21:46124400-46124600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr21:46124400-46124800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr21:46124400-46124800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
18	chr21:46124400-46124800	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr21:46124400-46127000	ZNF genes & repeats	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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