Variant report

Variant	rs9979295
Chromosome Location	chr21:17320400-17320401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16991576	0.85[AFR][1000 genomes]
rs9979913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17319200-17320800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr21:17319800-17320600	Enhancers	Fetal Lung	lung
3	chr21:17320000-17320400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:17320000-17320400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:17320000-17320400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr21:17320000-17320400	Active TSS	Brain Hippocampus Middle	brain
7	chr21:17320000-17320400	Enhancers	Brain Substantia Nigra	brain
8	chr21:17320000-17320400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr21:17320000-17320400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr21:17320000-17320400	Active TSS	Right Atrium	heart
11	chr21:17320000-17320400	Active TSS	Stomach Smooth Muscle	stomach
12	chr21:17320000-17320600	Active TSS	Brain Anterior Caudate	brain
13	chr21:17320400-17320600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr21:17320400-17321800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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