Variant report

Variant rs9979599
Chromosome Location chr21:46899672-46899673
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:46891600-46899800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr21:46891800-46906400 Strong transcription HUES6 Cell Line embryonic stem cell
3 chr21:46892000-46904000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr21:46892400-46907400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr21:46892600-46907000 Strong transcription H1 Cell Line embryonic stem cell
6 chr21:46892800-46900000 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr21:46892800-46908600 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr21:46893000-46909400 Strong transcription Breast Myoepithelial Primary Cells Breast
9 chr21:46893000-46911200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr21:46893600-46904800 Strong transcription A549 lung
11 chr21:46893600-46907600 Strong transcription iPS-15b Cell Line embryonic stem cell
12 chr21:46894000-46904800 Strong transcription iPS-18 Cell Line embryonic stem cell
13 chr21:46894000-46905000 Strong transcription HUES64 Cell Line embryonic stem cell
14 chr21:46894200-46907400 Strong transcription HUES48 Cell Line embryonic stem cell
15 chr21:46894400-46904800 Strong transcription Aorta Aorta
16 chr21:46894800-46904600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr21:46896400-46906200 Weak transcription Ovary ovary
18 chr21:46897400-46900000 Genic enhancers Spleen Spleen
19 chr21:46897800-46900000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
20 chr21:46897800-46900400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
21 chr21:46897800-46900400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
22 chr21:46897800-46900400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
23 chr21:46897800-46906200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr21:46898000-46899800 Strong transcription iPS-20b Cell Line embryonic stem cell
25 chr21:46898000-46900000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
26 chr21:46898000-46900400 Flanking Active TSS Primary T cells fromperipheralblood blood
27 chr21:46898000-46907000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr21:46898200-46903600 Weak transcription Brain Substantia Nigra brain
29 chr21:46898200-46904000 Strong transcription HepG2 liver
30 chr21:46898200-46904600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr21:46898200-46939600 Weak transcription Placenta Amnion Placenta Amnion
32 chr21:46898200-46945000 Weak transcription Right Atrium heart
33 chr21:46898400-46903600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr21:46898400-46908600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr21:46898400-46932800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr21:46898400-46937200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr21:46898600-46899800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
38 chr21:46898600-46901000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr21:46898600-46903000 Weak transcription Brain Hippocampus Middle brain
40 chr21:46898600-46904400 Strong transcription Fetal Stomach stomach
41 chr21:46898600-46915400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr21:46898600-46915400 Weak transcription Colon Smooth Muscle Colon
43 chr21:46898800-46900000 Enhancers Primary hematopoietic stem cells short term culture blood
44 chr21:46898800-46900200 Enhancers Primary Natural Killer cells fromperipheralblood blood
45 chr21:46898800-46900200 Strong transcription HSMM muscle
46 chr21:46898800-46900400 Enhancers Primary B cells from peripheral blood blood
47 chr21:46898800-46901400 Strong transcription Fetal Muscle Trunk muscle
48 chr21:46898800-46902000 Genic enhancers Fetal Thymus thymus
49 chr21:46898800-46903800 Weak transcription Brain Angular Gyrus brain
50 chr21:46898800-46904600 Strong transcription Fetal Adrenal Gland Adrenal Gland

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