Variant report

Variant	rs997985
Chromosome Location	chr1:175010010-175010011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10798331	0.81[JPT][hapmap]
rs10912878	0.80[JPT][hapmap]
rs2097548	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2105949	0.85[JPT][hapmap]
rs3018410	0.82[TSI][hapmap]
rs4651238	0.84[TSI][hapmap]
rs6425305	0.84[TSI][hapmap]
rs6425312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6663045	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6665216	0.84[TSI][hapmap]
rs6669560	0.85[JPT][hapmap]
rs6686278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355181	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7538588	0.84[TSI][hapmap]
rs964769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804056	0.84[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs997985	RABGAP1L	cis	normal skin	skin_eQTL
rs997985	SLC9A11	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174993200-175013800	Weak transcription	Spleen	Spleen
2	chr1:175006200-175012000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:175009400-175010200	Enhancers	Rectal Smooth Muscle	rectum
4	chr1:175009400-175010400	Enhancers	Colon Smooth Muscle	Colon
5	chr1:175009400-175010600	Enhancers	HepG2	liver
6	chr1:175009800-175010200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:175010000-175010400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:175010000-175010400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:175010000-175010600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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