Variant report

Variant	rs9980104
Chromosome Location	chr21:16936221-16936222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10470186	1.00[AMR][1000 genomes]
rs10470187	1.00[AMR][1000 genomes]
rs59307427	1.00[AMR][1000 genomes]
rs60069795	1.00[AMR][1000 genomes]
rs8128632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv528246	chr21:16935888-16980039	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16932600-16936600	Weak transcription	Fetal Intestine Large	intestine
2	chr21:16933000-16937200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr21:16933200-16936800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr21:16933200-16937200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr21:16933600-16937200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:16933800-16937200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr21:16934000-16937200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr21:16934400-16937200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr21:16935400-16936600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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