Variant report
| Variant | rs9981504 |
|---|---|
| Chromosome Location | chr21:27948636-27948637 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:27943628..27945913-chr21:27947174..27949619,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166265 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11909702 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11909722 | 0.86[ASN][1000 genomes] |
| rs11909726 | 0.86[ASN][1000 genomes] |
| rs11909749 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12627626 | 0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1893574 | 0.85[AMR][1000 genomes] |
| rs2830290 | 0.82[AMR][1000 genomes] |
| rs2830291 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2830292 | 0.85[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28379858 | 0.85[AMR][1000 genomes] |
| rs28493969 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28795732 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs57609356 | 0.90[AMR][1000 genomes] |
| rs59718907 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs60327526 | 0.83[AMR][1000 genomes] |
| rs62216535 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73351202 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73353009 | 0.83[AMR][1000 genomes] |
| rs8129509 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056506 | chr21:27332898-28049880 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv544412 | chr21:27332898-28049880 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv587335 | chr21:27715263-27955385 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv544413 | chr21:27942060-28065995 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
