Variant report

Variant	rs9983994
Chromosome Location	chr21:17956840-17956841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084583	1.00[EUR][1000 genomes]
rs10470097	1.00[EUR][1000 genomes]
rs11910639	1.00[EUR][1000 genomes]
rs28498786	1.00[AMR][1000 genomes]
rs28644471	0.84[AFR][1000 genomes]
rs28750139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55725525	1.00[EUR][1000 genomes]
rs59398000	1.00[EUR][1000 genomes]
rs59613864	1.00[EUR][1000 genomes]
rs73369752	1.00[EUR][1000 genomes]
rs73891587	1.00[EUR][1000 genomes]
rs73891590	1.00[EUR][1000 genomes]
rs73891608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73891609	1.00[EUR][1000 genomes]
rs73891610	1.00[EUR][1000 genomes]
rs73891615	1.00[EUR][1000 genomes]
rs73891620	1.00[EUR][1000 genomes]
rs73891621	1.00[EUR][1000 genomes]
rs73891622	1.00[EUR][1000 genomes]
rs73891630	1.00[EUR][1000 genomes]
rs73891632	1.00[EUR][1000 genomes]
rs73893766	1.00[EUR][1000 genomes]
rs9980238	1.00[EUR][1000 genomes]
rs9982363	1.00[EUR][1000 genomes]
rs9983563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17925400-17960400	Weak transcription	Esophagus	oesophagus
2	chr21:17934600-17958600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr21:17936800-17959400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:17950400-17959000	Weak transcription	Fetal Brain Male	brain
5	chr21:17952000-17959200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr21:17952200-17958800	Weak transcription	HSMMtube	muscle
7	chr21:17952200-17959000	Weak transcription	NHDF-Ad	bronchial
8	chr21:17952200-17959200	Weak transcription	Aorta	Aorta
9	chr21:17952200-17959400	Weak transcription	Fetal Muscle Leg	muscle
10	chr21:17952200-17959400	Weak transcription	Left Ventricle	heart
11	chr21:17952200-17959400	Weak transcription	Ovary	ovary
12	chr21:17952200-17959400	Weak transcription	NH-A	brain
13	chr21:17952400-17958600	Weak transcription	Fetal Brain Female	brain
14	chr21:17952800-17958400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr21:17953000-17958400	Weak transcription	Liver	Liver
16	chr21:17953200-17958600	Weak transcription	Brain Anterior Caudate	brain
17	chr21:17953400-17958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr21:17953400-17958600	Weak transcription	Brain Substantia Nigra	brain
19	chr21:17953400-17958600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr21:17953400-17959200	Weak transcription	Brain Angular Gyrus	brain
21	chr21:17953400-17959400	Weak transcription	HSMM	muscle
22	chr21:17953600-17958400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr21:17953600-17958800	Weak transcription	Colon Smooth Muscle	Colon
24	chr21:17953600-17959200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr21:17953600-17959400	Weak transcription	Adipose Nuclei	Adipose
26	chr21:17953800-17958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr21:17954200-17958400	Weak transcription	Fetal Lung	lung
28	chr21:17955800-17957000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr21:17955800-17957200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr21:17955800-17957400	Enhancers	Osteobl	bone
31	chr21:17955800-17959400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr21:17956000-17957000	Enhancers	Brain Germinal Matrix	brain
33	chr21:17956000-17958600	Enhancers	Hela-S3	cervix
34	chr21:17956200-17959200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr21:17956400-17957200	Weak transcription	A549	lung
36	chr21:17956400-17958400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr21:17956400-17958400	Weak transcription	HUVEC	blood vessel
38	chr21:17956400-17958600	Weak transcription	Brain Hippocampus Middle	brain
39	chr21:17956800-17957000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr21:17956800-17957000	Enhancers	Pancreas	Pancrea
41	chr21:17956800-17957000	Enhancers	Right Atrium	heart
42	chr21:17956800-17957200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links