Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81282233..81282906-chr4:81970669..81971299,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10022780	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs6857871	0.96[AFR][1000 genomes]
rs7666880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307778	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
4	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:81967600-81973400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:81968400-81971200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:81968400-81973400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:81969400-81973800	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:81970000-81971600	Enhancers	Ovary	ovary
10	chr4:81970200-81971200	Active TSS	Stomach Smooth Muscle	stomach
11	chr4:81970400-81971400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:81970400-81971400	Enhancers	Fetal Lung	lung
13	chr4:81970600-81971800	Enhancers	Adipose Nuclei	Adipose
14	chr4:81970800-81971200	Enhancers	Right Ventricle	heart
15	chr4:81970800-81971400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:81970800-81971400	Enhancers	Fetal Heart	heart
17	chr4:81970800-81971600	Enhancers	Fetal Stomach	stomach
18	chr4:81970800-81971600	Bivalent Enhancer	Small Intestine	intestine
19	chr4:81971000-81971200	Enhancers	Colon Smooth Muscle	Colon
20	chr4:81971000-81971400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:81971000-81971400	Enhancers	Fetal Muscle Leg	muscle
22	chr4:81971000-81971800	Enhancers	Duodenum Smooth Muscle	Duodenum

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