Variant report

Variant	rs9987773
Chromosome Location	chr9:101060933-101060934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101056649..101059744-chr9:101060556..101062538,4	K562	blood:
2	chr9:101056649..101059040-chr9:101060556..101062926,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10156520	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10156596	0.85[EUR][1000 genomes]
rs10818728	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10985682	0.86[EUR][1000 genomes]
rs10985714	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10985747	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12341227	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12343605	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12347890	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12349672	0.89[AMR][1000 genomes]
rs12350177	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12551959	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12552446	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12683370	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12683816	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685596	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685597	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16914485	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2304391	0.89[EUR][1000 genomes]
rs28636819	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55740603	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56406831	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7037857	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7853699	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs962220	0.95[ASN][1000 genomes]
rs9987447	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101049000-101062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101050600-101064600	Weak transcription	Fetal Brain Female	brain
3	chr9:101052400-101065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:101054600-101063600	Weak transcription	K562	blood
5	chr9:101055400-101061000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:101055400-101068400	Weak transcription	Brain Germinal Matrix	brain
7	chr9:101056200-101064800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:101060600-101061600	Strong transcription	Brain Angular Gyrus	brain
9	chr9:101060600-101062000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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