Variant report

Variant	rs9988595
Chromosome Location	chr1:169167675-169167676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10158265	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10158861	0.85[AMR][1000 genomes]
rs10919088	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10919102	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12023291	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025233	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12026996	0.81[AMR][1000 genomes]
rs12029853	0.85[AMR][1000 genomes]
rs12032783	0.85[AMR][1000 genomes]
rs12033078	0.85[AMR][1000 genomes]
rs12037211	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12038609	0.85[AMR][1000 genomes]
rs12043489	0.85[AMR][1000 genomes]
rs12043545	0.85[AMR][1000 genomes]
rs12045202	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047231	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12129969	0.86[CHB][hapmap]
rs2268048	0.85[AMR][1000 genomes]
rs3766058	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3766089	0.85[AMR][1000 genomes]
rs3820058	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56341747	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58585501	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61806986	0.85[AMR][1000 genomes]
rs61808865	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61808914	0.85[AMR][1000 genomes]
rs61808915	0.85[AMR][1000 genomes]
rs6664272	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6685556	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7521338	0.85[AMR][1000 genomes]
rs9633334	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804101	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9988604	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169163600-169184000	Weak transcription	Ovary	ovary
3	chr1:169165800-169169400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:169167200-169176400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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