Variant report

Variant	rs9989091
Chromosome Location	chr13:70553522-70553523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1441542	1.00[JPT][hapmap]
rs1441558	0.89[ASN][1000 genomes]
rs1441559	0.88[ASN][1000 genomes]
rs1441561	0.88[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1441562	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1596073	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2033988	0.88[ASN][1000 genomes]
rs2033989	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2243802	0.85[ASN][1000 genomes]
rs2439612	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2439666	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2439667	0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2472275	0.84[ASN][1000 genomes]
rs2472277	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2472280	0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2501248	0.88[ASN][1000 genomes]
rs9317861	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317864	0.84[ASN][1000 genomes]
rs9529664	0.87[CEU][hapmap];0.87[JPT][hapmap]
rs9542158	0.85[ASN][1000 genomes]
rs9542159	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9542160	0.80[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs9542161	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9572325	0.84[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs9592673	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9599532	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9599533	1.00[JPT][hapmap]
rs9989090	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900491	chr13:70499394-70578306	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900492	chr13:70508163-70560731	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900493	chr13:70508163-70578306	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv530606	chr13:70510296-70780461	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70552600-70554000	Weak transcription	Hela-S3	cervix

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