Variant report

Variant	rs9989201
Chromosome Location	chr14:77625148-77625149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77624750..77626748-chr14:77767374..77769849,2	MCF-7	breast:
2	chr14:77617758..77621204-chr14:77622193..77625212,3	MCF-7	breast:
3	chr14:77623679..77628078-chr14:77791213..77793958,3	MCF-7	breast:
4	chr14:77615331..77626101-chr14:77782557..77793016,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11625327	0.81[EUR][1000 genomes]
rs11628257	0.81[GIH][hapmap];0.94[TSI][hapmap]
rs12589638	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs158110	0.83[ASW][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap]
rs158114	0.85[JPT][hapmap];0.95[AFR][1000 genomes]
rs17812088	0.90[CEU][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs28652717	0.90[ASN][1000 genomes]
rs61990327	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7150602	0.81[EUR][1000 genomes]
rs8018063	0.81[GIH][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv976845	chr14:77621865-77649191	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77624000-77625200	Enhancers	Gastric	stomach
2	chr14:77624000-77625600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:77624200-77625200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:77624200-77625200	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr14:77624200-77625200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr14:77624200-77625200	Enhancers	NH-A	brain
7	chr14:77624200-77625400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:77624200-77625400	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr14:77624200-77625400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr14:77624200-77625600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr14:77624200-77625600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:77624200-77625600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:77624200-77625600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr14:77624200-77625600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr14:77624200-77625600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr14:77624200-77625600	Enhancers	A549	lung
17	chr14:77624200-77625800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr14:77624200-77625800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:77624400-77625200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:77624400-77625200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:77624400-77625200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
22	chr14:77624400-77625400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr14:77624400-77625400	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr14:77624600-77625200	Enhancers	Esophagus	oesophagus
25	chr14:77624800-77625200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:77624800-77625200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:77624800-77625200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:77624800-77625200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:77624800-77625200	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr14:77624800-77625200	Enhancers	Left Ventricle	heart
31	chr14:77624800-77625200	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
32	chr14:77624800-77625200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
33	chr14:77624800-77625200	Bivalent Enhancer	NHEK	skin
34	chr14:77624800-77625400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr14:77624800-77625400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr14:77624800-77625400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr14:77624800-77625400	Flanking Active TSS	Fetal Brain Female	brain
38	chr14:77624800-77625400	Enhancers	Ovary	ovary
39	chr14:77624800-77625400	Enhancers	Right Atrium	heart
40	chr14:77624800-77625600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr14:77624800-77625600	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr14:77624800-77625600	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr14:77625000-77625200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:77625000-77625200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:77625000-77625200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
46	chr14:77625000-77625200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:77625000-77625200	Bivalent Enhancer	Adipose Nuclei	Adipose
48	chr14:77625000-77625200	Active TSS	Colon Smooth Muscle	Colon
49	chr14:77625000-77625200	Bivalent Enhancer	Fetal Thymus	thymus
50	chr14:77625000-77625200	Bivalent/Poised TSS	NHDF-Ad	bronchial

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