Variant report

Variant	rs9991550
Chromosome Location	chr4:91211087-91211088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91047797..91050906-chr4:91208827..91216551,11	MCF-7	breast:
2	chr4:91049244..91050799-chr4:91210980..91212924,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10004546	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10019966	0.81[EUR][1000 genomes]
rs11097245	0.85[EUR][1000 genomes]
rs11929978	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12641481	0.84[EUR][1000 genomes]
rs12642077	0.83[CHB][hapmap]
rs12643164	0.85[EUR][1000 genomes]
rs12647918	0.85[EUR][1000 genomes]
rs12650357	0.81[EUR][1000 genomes]
rs13135325	0.85[EUR][1000 genomes]
rs1367568	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1367569	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1431022	0.85[EUR][1000 genomes]
rs1431026	0.85[EUR][1000 genomes]
rs1461743	0.92[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1466391	0.89[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17206950	0.85[EUR][1000 genomes]
rs17812368	0.85[EUR][1000 genomes]
rs1835526	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2116123	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2870041	0.84[EUR][1000 genomes]
rs2870246	0.88[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs2904293	0.84[EUR][1000 genomes]
rs34025251	0.82[EUR][1000 genomes]
rs35065484	0.84[EUR][1000 genomes]
rs35927574	0.83[EUR][1000 genomes]
rs4328879	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60201230	0.85[EUR][1000 genomes]
rs6532216	0.82[EUR][1000 genomes]
rs6532217	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6532218	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6532220	0.84[EUR][1000 genomes]
rs6532223	0.83[EUR][1000 genomes]
rs6818163	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6823000	0.83[EUR][1000 genomes]
rs6823451	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6823501	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6840859	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6840905	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6847487	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6854773	0.82[EUR][1000 genomes]
rs71598437	0.82[EUR][1000 genomes]
rs7656001	0.83[CHB][hapmap]
rs7664194	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7682617	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7695098	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7695158	0.82[EUR][1000 genomes]
rs7700100	0.85[EUR][1000 genomes]
rs919578	0.85[EUR][1000 genomes]
rs919579	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs963207	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9684316	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv818250	chr4:91195869-91212092	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524051	chr4:91195869-91227681	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91210400-91211800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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