Variant report

Variant	rs9992179
Chromosome Location	chr4:95766650-95766651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95763923..95766773-chr4:95768143..95770338,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10003992	0.81[ASN][1000 genomes]
rs10004478	0.80[EUR][1000 genomes]
rs10004573	0.80[EUR][1000 genomes]
rs10005096	0.80[EUR][1000 genomes]
rs10005252	0.80[EUR][1000 genomes]
rs10005450	0.80[EUR][1000 genomes]
rs10010959	0.80[EUR][1000 genomes]
rs10014945	0.80[EUR][1000 genomes]
rs10015222	0.80[EUR][1000 genomes]
rs10017575	0.80[EUR][1000 genomes]
rs10027656	0.80[EUR][1000 genomes]
rs10033559	0.80[EUR][1000 genomes]
rs10212893	0.80[EUR][1000 genomes]
rs11097443	0.80[EUR][1000 genomes]
rs11097444	0.80[EUR][1000 genomes]
rs11097445	0.80[EUR][1000 genomes]
rs11934778	0.80[EUR][1000 genomes]
rs12500280	0.80[EUR][1000 genomes]
rs12500330	0.80[EUR][1000 genomes]
rs13103529	0.80[EUR][1000 genomes]
rs13117041	0.80[EUR][1000 genomes]
rs13117507	0.80[EUR][1000 genomes]
rs13127197	0.80[EUR][1000 genomes]
rs13127833	0.80[EUR][1000 genomes]
rs13127842	0.80[EUR][1000 genomes]
rs13127888	0.80[EUR][1000 genomes]
rs13151193	0.80[EUR][1000 genomes]
rs1319314	0.80[EUR][1000 genomes]
rs1319315	0.80[EUR][1000 genomes]
rs1319316	0.80[EUR][1000 genomes]
rs1544386	0.80[EUR][1000 genomes]
rs2865413	0.80[EUR][1000 genomes]
rs4254781	0.80[EUR][1000 genomes]
rs4256228	0.80[EUR][1000 genomes]
rs4361394	0.80[EUR][1000 genomes]
rs4364269	0.80[EUR][1000 genomes]
rs4429734	0.80[EUR][1000 genomes]
rs4437261	0.80[EUR][1000 genomes]
rs4538488	0.80[EUR][1000 genomes]
rs6532512	0.80[EUR][1000 genomes]
rs6812504	0.80[EUR][1000 genomes]
rs6816019	0.80[EUR][1000 genomes]
rs6816482	0.80[EUR][1000 genomes]
rs6817080	0.80[EUR][1000 genomes]
rs6817662	0.80[EUR][1000 genomes]
rs6828354	0.80[EUR][1000 genomes]
rs6828538	0.80[EUR][1000 genomes]
rs6828950	0.80[EUR][1000 genomes]
rs6829477	0.80[EUR][1000 genomes]
rs6834911	0.81[EUR][1000 genomes]
rs6835688	0.80[EUR][1000 genomes]
rs6843053	0.80[EUR][1000 genomes]
rs6854743	0.80[EUR][1000 genomes]
rs6857888	0.80[EUR][1000 genomes]
rs6858126	0.81[EUR][1000 genomes]
rs6858143	0.81[EUR][1000 genomes]
rs7654266	0.80[EUR][1000 genomes]
rs7691832	0.80[EUR][1000 genomes]
rs7692197	0.82[EUR][1000 genomes]
rs916877	0.80[EUR][1000 genomes]
rs916878	0.80[EUR][1000 genomes]
rs9307148	0.80[EUR][1000 genomes]
rs978122	0.80[EUR][1000 genomes]
rs9992130	0.80[EUR][1000 genomes]
rs9992184	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9995378	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95763200-95769800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:95765000-95767200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:95765600-95770200	Weak transcription	Thymus	Thymus
4	chr4:95766000-95766800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:95766200-95770400	Weak transcription	Fetal Thymus	thymus

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