Variant report

Variant	rs9992560
Chromosome Location	chr4:18881056-18881057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008431	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10489055	0.82[EUR][1000 genomes]
rs1079812	0.80[EUR][1000 genomes]
rs13119001	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129810	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13142105	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452555	0.82[EUR][1000 genomes]
rs1452556	0.80[EUR][1000 genomes]
rs1517995	0.80[ASN][1000 genomes]
rs1517996	0.80[ASN][1000 genomes]
rs16897766	0.82[ASN][1000 genomes]
rs1990495	0.81[EUR][1000 genomes]
rs2048962	0.80[ASN][1000 genomes]
rs2067979	1.00[ASN][1000 genomes]
rs28377112	0.80[EUR][1000 genomes]
rs34295055	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4697168	0.80[ASN][1000 genomes]
rs6449426	0.80[ASN][1000 genomes]
rs6449427	0.80[ASN][1000 genomes]
rs6839469	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7356391	0.80[ASN][1000 genomes]
rs7680497	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7685547	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992468	0.80[EUR][1000 genomes]
rs9995472	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1000054	chr4:18839588-19271261	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537051	chr4:18839588-19271261	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv428754	chr4:18871493-18907110	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1008625	chr4:18880048-19148705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18877400-18885600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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