Variant report

Variant	rs9992669
Chromosome Location	chr4:96097902-96097903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10155123	0.80[EUR][1000 genomes]
rs10155222	0.81[EUR][1000 genomes]
rs10212627	0.81[EUR][1000 genomes]
rs11097458	0.82[EUR][1000 genomes]
rs13139538	0.85[EUR][1000 genomes]
rs1813074	0.81[EUR][1000 genomes]
rs2241744	0.81[EUR][1000 genomes]
rs965823	0.81[EUR][1000 genomes]
rs975608	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96059800-96100400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:96080400-96098600	Weak transcription	Fetal Kidney	kidney
3	chr4:96084600-96111800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:96084800-96099800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:96087600-96107000	Weak transcription	A549	lung
6	chr4:96089200-96098400	Weak transcription	Aorta	Aorta
7	chr4:96089200-96098400	Weak transcription	Ovary	ovary
8	chr4:96090600-96098400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:96091000-96111600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:96091200-96098000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:96091400-96098000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:96091400-96098200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:96091400-96109400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:96091600-96098000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:96091600-96098400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:96091800-96098000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:96091800-96098200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:96091800-96098400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:96091800-96098400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:96091800-96098400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:96091800-96098400	Weak transcription	Fetal Lung	lung
22	chr4:96092000-96098200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:96092000-96098400	Weak transcription	Brain Angular Gyrus	brain
24	chr4:96092000-96098400	Weak transcription	Brain Anterior Caudate	brain
25	chr4:96092000-96098400	Weak transcription	Brain Substantia Nigra	brain
26	chr4:96092200-96098400	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:96097600-96098200	Weak transcription	Dnd41	blood
28	chr4:96097600-96098400	Weak transcription	Spleen	Spleen
29	chr4:96097600-96099600	ZNF genes & repeats	Fetal Stomach	stomach

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