Variant report

Variant	rs9992677
Chromosome Location	chr4:60026721-60026722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10007636	0.92[ASN][1000 genomes]
rs10009725	0.92[ASN][1000 genomes]
rs13109185	0.92[ASN][1000 genomes]
rs13136904	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1393593	0.89[ASN][1000 genomes]
rs1502776	0.92[ASN][1000 genomes]
rs1502777	0.92[ASN][1000 genomes]
rs1910282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973511	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2009488	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2134434	0.92[ASN][1000 genomes]
rs2334163	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs357811	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs357812	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357813	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357815	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357816	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357817	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs371103	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs371989	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372580	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399068	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402506	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs415904	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436198	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4467647	0.90[ASN][1000 genomes]
rs4467648	0.92[ASN][1000 genomes]
rs4467649	0.92[ASN][1000 genomes]
rs4467650	0.92[ASN][1000 genomes]
rs4860419	0.92[ASN][1000 genomes]
rs4992785	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992786	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992787	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992788	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992789	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4992790	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58277587	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551610	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551611	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66507547	0.82[ASN][1000 genomes]
rs6811288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819424	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6823081	0.92[ASN][1000 genomes]
rs6846035	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7665625	0.90[ASN][1000 genomes]
rs7672870	0.84[ASN][1000 genomes]
rs7673212	0.92[ASN][1000 genomes]
rs7673404	0.92[ASN][1000 genomes]
rs7673629	0.88[ASN][1000 genomes]
rs7678946	0.92[ASN][1000 genomes]
rs7691310	0.91[ASN][1000 genomes]
rs7691338	0.91[ASN][1000 genomes]
rs7696174	0.92[ASN][1000 genomes]
rs7696570	0.92[ASN][1000 genomes]
rs905367	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9312080	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60024600-60026800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:60025000-60027000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:60025200-60026800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr4:60025600-60026800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:60026200-60026800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links