Variant report

Variant	rs999300
Chromosome Location	chr1:91011613-91011614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493838	0.81[EUR][1000 genomes]
rs10801817	0.93[CEU][hapmap]
rs10922869	0.81[EUR][1000 genomes]
rs10922870	0.81[EUR][1000 genomes]
rs10922878	0.92[ASN][1000 genomes]
rs12078190	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078288	0.91[ASN][1000 genomes]
rs12083284	0.91[ASN][1000 genomes]
rs1336874	0.81[EUR][1000 genomes]
rs1336878	0.91[ASN][1000 genomes]
rs1336881	0.84[ASN][1000 genomes]
rs17131079	0.87[CHB][hapmap]
rs1954970	0.81[EUR][1000 genomes]
rs28488175	0.92[ASN][1000 genomes]
rs6684834	0.81[EUR][1000 genomes]
rs693260	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699520	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699521	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7411404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90998600-91017000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:91010600-91013000	Weak transcription	Dnd41	blood
3	chr1:91011200-91012200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links