Variant report
| Variant | rs9994113 |
|---|---|
| Chromosome Location | chr4:55192547-55192548 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10016845 | 0.86[ASN][1000 genomes] |
| rs10028483 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10029431 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11726309 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11728929 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11729535 | 0.86[ASN][1000 genomes] |
| rs11732117 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11732388 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11737169 | 0.86[ASN][1000 genomes] |
| rs1565668 | 0.81[ASN][1000 genomes] |
| rs17084148 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2087806 | 0.91[ASN][1000 genomes] |
| rs28379127 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28714526 | 0.90[ASN][1000 genomes] |
| rs4583821 | 0.94[ASN][1000 genomes] |
| rs4864510 | 0.91[ASN][1000 genomes] |
| rs4864879 | 0.93[ASN][1000 genomes] |
| rs56342025 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57765231 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs62299414 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62299416 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6850695 | 0.90[ASN][1000 genomes] |
| rs73234205 | 0.85[ASN][1000 genomes] |
| rs9991681 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008793 | chr4:55060925-55535807 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv537098 | chr4:55060925-55535807 | Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv999400 | chr4:55143598-55776995 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv4341 | chr4:55172085-55217655 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:55189800-55198800 | Weak transcription | Brain Cingulate Gyrus | brain |
