Variant report

Variant	rs9994774
Chromosome Location	chr4:85403167-85403168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NKX6-1-4	chr4:85403072-85403396	NONHSAT097239

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1444965	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs978936	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85401400-85403400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr4:85401600-85403400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85402000-85405000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
4	chr4:85402200-85403600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr4:85402200-85403800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:85402400-85403200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr4:85402400-85403400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:85402400-85403400	Bivalent Enhancer	Fetal Intestine Small	intestine
9	chr4:85402400-85403800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr4:85402400-85404000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr4:85402400-85404000	Bivalent Enhancer	Liver	Liver
12	chr4:85402400-85404000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr4:85402400-85404200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr4:85402400-85404600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:85402400-85404800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr4:85402400-85405000	Bivalent Enhancer	Fetal Heart	heart
17	chr4:85402400-85405400	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr4:85402600-85403200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:85402600-85403200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr4:85402600-85403200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
21	chr4:85402600-85403200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
22	chr4:85402600-85403400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:85402600-85403400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:85402600-85403400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:85402600-85403400	Bivalent Enhancer	Fetal Brain Male	brain
26	chr4:85402600-85403600	Bivalent Enhancer	Brain Hippocampus Middle	brain
27	chr4:85402600-85403800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr4:85402600-85403800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:85402600-85403800	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr4:85402600-85404200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
31	chr4:85402600-85404400	Bivalent Enhancer	NH-A	brain
32	chr4:85402600-85405200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
33	chr4:85402800-85403200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr4:85402800-85403200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr4:85402800-85403200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:85402800-85403200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
37	chr4:85402800-85403400	Bivalent Enhancer	Thymus	Thymus
38	chr4:85402800-85403600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:85402800-85403800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
40	chr4:85402800-85403800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:85402800-85403800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr4:85402800-85404200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:85402800-85404200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr4:85402800-85405000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr4:85403000-85403200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:85403000-85403200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:85403000-85403200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:85403000-85403200	Bivalent/Poised TSS	Colonic Mucosa	Colon
49	chr4:85403000-85403200	Flanking Active TSS	Right Ventricle	heart
50	chr4:85403000-85403200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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