Variant report

Variant	rs999805
Chromosome Location	chr11:120812196-120812197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9665960	1.00[CEU][hapmap]
rs9666074	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120800600-120815200	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120802200-120823200	Weak transcription	Ovary	ovary
3	chr11:120808600-120815200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:120808600-120815400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:120808600-120815600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:120810400-120821600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:120810800-120812800	Enhancers	NHDF-Ad	bronchial
8	chr11:120811000-120812200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:120811400-120815400	Strong transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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