Variant report

Variant	rs9999071
Chromosome Location	chr4:152984901-152984902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10003345	1.00[AMR][1000 genomes]
rs10013460	1.00[AMR][1000 genomes]
rs10013642	1.00[AMR][1000 genomes]
rs10025820	1.00[AMR][1000 genomes]
rs10032430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425400	1.00[AMR][1000 genomes]
rs1425401	1.00[AMR][1000 genomes]
rs28562808	1.00[AMR][1000 genomes]
rs28585419	1.00[AMR][1000 genomes]
rs28603056	1.00[AMR][1000 genomes]
rs28640127	1.00[AMR][1000 genomes]
rs28681446	1.00[AMR][1000 genomes]
rs72953023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152978800-152985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:152981200-152985400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:152983200-152985800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:152983600-152985600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:152983800-152985400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:152983800-153000800	Enhancers	Fetal Thymus	thymus
7	chr4:152984000-152986600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:152984000-152988000	Enhancers	Dnd41	blood
9	chr4:152984000-152988200	Enhancers	Thymus	Thymus
10	chr4:152984200-152985000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:152984200-152985000	Enhancers	HSMMtube	muscle
12	chr4:152984200-152985400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:152984200-152985600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:152984200-152985600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:152984200-152986800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:152984200-152987200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:152984400-152985200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:152984400-152985200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr4:152984400-152985200	Enhancers	Stomach Mucosa	stomach
20	chr4:152984400-152985400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:152984400-152985800	Enhancers	Primary T cells from cord blood	blood
22	chr4:152984400-152985800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:152984400-152986000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr4:152984400-152986200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:152984400-152987600	Enhancers	Fetal Muscle Leg	muscle
26	chr4:152984600-152985200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:152984600-152986400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr4:152984800-152985000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:152984800-152985000	Enhancers	NHEK	skin
30	chr4:152984800-152985200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:152984800-152985200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr4:152984800-152985200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:152984800-152985400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:152984800-152985400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:152984800-152985400	Enhancers	Gastric	stomach
36	chr4:152984800-152985600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:152984800-152985600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr4:152984800-152985600	Enhancers	Hela-S3	cervix
39	chr4:152984800-152985800	Enhancers	Fetal Intestine Small	intestine
40	chr4:152984800-152985800	Enhancers	Fetal Lung	lung
41	chr4:152984800-152986200	Enhancers	HSMM	muscle
42	chr4:152984800-152986600	Enhancers	Fetal Kidney	kidney
43	chr4:152984800-152986800	Enhancers	Brain Germinal Matrix	brain
44	chr4:152984800-152986800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr4:152984800-152987000	Enhancers	Fetal Heart	heart

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