Variant report

Variant	rs9999151
Chromosome Location	chr4:79096934-79096935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79091323..79093499-chr4:79096107..79097895,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17003022	0.97[AFR][1000 genomes]
rs17003025	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17003031	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv829977	chr4:79082318-79110300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79090200-79104200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:79092200-79097000	Weak transcription	Fetal Kidney	kidney
3	chr4:79094200-79097200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:79094600-79098000	Weak transcription	Right Atrium	heart
5	chr4:79094800-79097400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:79095000-79097400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:79095200-79097200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:79095200-79099000	Enhancers	Fetal Intestine Large	intestine
9	chr4:79095400-79097200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:79095400-79097600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:79095400-79099200	Enhancers	HepG2	liver
12	chr4:79095600-79097000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:79095600-79097000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:79095600-79097000	Enhancers	Psoas Muscle	Psoas
15	chr4:79095600-79097200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:79095600-79097600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:79095800-79097400	Weak transcription	Fetal Heart	heart
18	chr4:79096000-79097200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:79096200-79097600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:79096200-79098200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:79096200-79099000	Enhancers	Fetal Intestine Small	intestine
22	chr4:79096200-79106200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:79096400-79097000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:79096400-79097200	Enhancers	Lung	lung
25	chr4:79096400-79097400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:79096400-79098800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:79096600-79097200	Enhancers	Pancreas	Pancrea
28	chr4:79096600-79097600	Enhancers	A549	lung
29	chr4:79096600-79098200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:79096600-79100000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:79096600-79100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr4:79096800-79097200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:79096800-79097200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr4:79096800-79097800	Enhancers	Fetal Lung	lung
35	chr4:79096800-79098200	Enhancers	HMEC	breast
36	chr4:79096800-79099200	Enhancers	Placenta	Placenta

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