Variant report

Variant	rs9999924
Chromosome Location	chr4:143478545-143478546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143477154..143478767-chr4:143496726..143498500,2	MCF-7	breast:
2	chr4:143461464..143464431-chr4:143476844..143478769,2	MCF-7	breast:
3	chr1:238698799..238701198-chr4:143478003..143480766,2	MCF-7	breast:
4	chr4:143393408..143395744-chr4:143477847..143480284,3	MCF-7	breast:
5	chr4:143471348..143473653-chr4:143477211..143480066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10008043	1.00[AMR][1000 genomes]
rs10013894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6837769	1.00[AMR][1000 genomes]
rs6853124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9996162	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143468800-143480000	Weak transcription	Left Ventricle	heart
2	chr4:143470800-143478600	Weak transcription	Pancreas	Pancrea
3	chr4:143471200-143481800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:143471400-143481800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:143471600-143480000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:143472200-143478600	Weak transcription	Fetal Heart	heart
7	chr4:143472400-143481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:143472600-143486800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:143473000-143479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:143475600-143480400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:143475600-143488000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:143476800-143478600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:143477200-143478800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr4:143477200-143478800	Enhancers	Fetal Intestine Large	intestine
15	chr4:143477200-143479200	Enhancers	Primary T cells from cord blood	blood
16	chr4:143477200-143479200	Enhancers	Fetal Intestine Small	intestine
17	chr4:143477400-143478800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr4:143477400-143479600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:143477800-143478800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:143477800-143478800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr4:143477800-143479800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:143477800-143484400	Weak transcription	HMEC	breast
23	chr4:143477800-143487000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:143478000-143478800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr4:143478000-143480200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:143478000-143486600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:143478000-143486800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:143478200-143478800	Enhancers	Fetal Thymus	thymus
29	chr4:143478200-143479200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:143478200-143480200	Weak transcription	Fetal Kidney	kidney
31	chr4:143478200-143486000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:143478400-143478600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr4:143478400-143479400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr4:143478400-143480000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:143478400-143482000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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