Variant report

Variant	esv1009764
Chromosome Location	chr10:94134254-94139324
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94051163..94054027-chr10:94136887..94138401,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78645395	chr10:94138018-94138019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs111743215	chr10:94138020-94138021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs534214174	chr10:94138029-94138030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs528089105	chr10:94138036-94138037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs540408576	chr10:94138086-94138087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs11596695	chr10:94138094-94138095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs143120065	chr10:94138118-94138119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs562368432	chr10:94138146-94138147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs545805669	chr10:94138169-94138170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs373483461	chr10:94138179-94138180	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs138431951	chr10:94138198-94138199	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs373679762	chr10:94138228-94138229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs7903767	chr10:94138239-94138240	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs183851161	chr10:94138264-94138265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs143912300	chr10:94138265-94138266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10882052	chr10:94138273-94138274	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs548041756	chr10:94138506-94138507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188622064	chr10:94138520-94138521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568055164	chr10:94138535-94138536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs536843695	chr10:94138551-94138552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557147933	chr10:94138560-94138561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374874250	chr10:94138614-94138615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576848529	chr10:94138647-94138648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs539482319	chr10:94138651-94138652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11186955	chr10:94138671-94138672	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs572749816	chr10:94138700-94138701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541854073	chr10:94138734-94138735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561705611	chr10:94138776-94138777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562368152	chr10:94138781-94138782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561895078	chr10:94138806-94138807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181364157	chr10:94138815-94138816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186803833	chr10:94138838-94138839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11186956	chr10:94138839-94138840	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs139047524	chr10:94138844-94138845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs547203406	chr10:94138858-94138859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373291875	chr10:94138860-94138861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529242082	chr10:94138884-94138885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570497077	chr10:94138892-94138893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs141397750	chr10:94138910-94138911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567990767	chr10:94138919-94138920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371143136	chr10:94138926-94138927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192058727	chr10:94138932-94138933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551091457	chr10:94138957-94138958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550616518	chr10:94139006-94139007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570595662	chr10:94139010-94139011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11186957	chr10:94139014-94139015	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs58801821	chr10:94139020-94139021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549905869	chr10:94139033-94139034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533197533	chr10:94139037-94139038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552990011	chr10:94139071-94139072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Sezary syndrome	18413736	CNVD
Intracranial aneurysm	16715129	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94138000-94138400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:94138400-94140400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links