Variant report

Variant	rs10882052
Chromosome Location	chr10:94138273-94138274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94051163..94054027-chr10:94136887..94138401,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10509644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1057848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882031	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs10882037	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs10882049	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186852	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186856	0.89[CHD][hapmap]
rs11186859	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186860	0.89[CHB][hapmap]
rs11186866	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186870	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186875	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186879	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186884	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186888	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186894	0.83[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs11186895	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11186898	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs11186926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.82[ASN][1000 genomes]
rs11186931	0.82[ASN][1000 genomes]
rs11186932	0.82[ASN][1000 genomes]
rs11186956	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11186958	0.87[AMR][1000 genomes]
rs12358967	0.82[ASN][1000 genomes]
rs17107517	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs2421831	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs34761542	0.82[ASN][1000 genomes]
rs3781230	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs61875240	0.80[ASN][1000 genomes]
rs61875241	0.82[ASN][1000 genomes]
rs61875243	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7080813	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088903	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs746842	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7903767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911784	0.86[AMR][1000 genomes]
rs7912223	0.85[AMR][1000 genomes]
rs9787608	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv7492	chr10:94115207-94138463	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1009764	chr10:94134254-94139324	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10882052	MARCH5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94138000-94138400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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