Variant report

Variant	rs1057848
Chromosome Location	chr10:94112156-94112157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94050257..94052434-chr10:94110043..94112684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107864	Chromatin interaction
ENSG00000198060	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10509644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10786035	0.86[ASN][1000 genomes]
rs10882031	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs10882037	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs10882049	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882052	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186839	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186841	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186852	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186856	0.89[CHD][hapmap]
rs11186859	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186860	0.89[CHB][hapmap]
rs11186866	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186868	0.86[MKK][hapmap]
rs11186870	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186875	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186879	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs11186884	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.86[MKK][hapmap]
rs11186888	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186894	0.83[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[MKK][hapmap]
rs11186895	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11186898	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.88[MKK][hapmap]
rs11186910	0.86[ASN][1000 genomes]
rs11186912	0.86[ASN][1000 genomes]
rs11186923	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11186926	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs11186931	0.88[ASN][1000 genomes]
rs11186932	0.88[ASN][1000 genomes]
rs11186959	0.94[AFR][1000 genomes]
rs11186960	0.94[AFR][1000 genomes]
rs11186965	0.89[AFR][1000 genomes]
rs11186966	0.94[AFR][1000 genomes]
rs11186967	0.94[AFR][1000 genomes]
rs11186968	0.94[AFR][1000 genomes]
rs11186969	0.89[AFR][1000 genomes]
rs12358967	0.88[ASN][1000 genomes]
rs17107517	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs17365265	1.00[YRI][hapmap]
rs1812851	0.86[ASN][1000 genomes]
rs2421831	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs34761542	0.88[ASN][1000 genomes]
rs3781230	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs61875240	0.87[ASN][1000 genomes]
rs61875241	0.88[ASN][1000 genomes]
rs61875243	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7067935	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs7080813	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088903	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs746842	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7903767	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787608	0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1057848	FGFBP3	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
2	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:94081000-94112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:94088000-94112200	Weak transcription	K562	blood
5	chr10:94089000-94114600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:94089800-94114000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:94090600-94114800	Weak transcription	Small Intestine	intestine
8	chr10:94091200-94114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:94099200-94113400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:94100200-94113600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:94101400-94113400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:94103400-94113800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:94104400-94113400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:94105800-94115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:94106000-94112400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:94106600-94112800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:94108200-94112600	Strong transcription	NHDF-Ad	bronchial
18	chr10:94108400-94112200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:94108800-94112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:94109400-94112200	Strong transcription	A549	lung
21	chr10:94109800-94114600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:94110000-94113400	Weak transcription	GM12878-XiMat	blood
23	chr10:94110000-94114600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:94110000-94115800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:94110200-94112600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:94110200-94112800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:94110200-94115800	Weak transcription	Fetal Kidney	kidney
28	chr10:94110200-94115800	Weak transcription	HSMMtube	muscle
29	chr10:94110400-94112200	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:94110400-94112200	Weak transcription	HepG2	liver
31	chr10:94110600-94112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:94110600-94112200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:94110600-94112200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:94110600-94112200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:94110600-94112200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:94110600-94112200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:94110600-94112200	Weak transcription	Ovary	ovary
38	chr10:94110600-94112400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:94110600-94112400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:94110600-94112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:94110600-94112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:94110600-94113000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:94110600-94113400	Weak transcription	Aorta	Aorta
44	chr10:94110600-94113400	Weak transcription	Spleen	Spleen
45	chr10:94110600-94114000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:94110600-94114400	Weak transcription	Fetal Stomach	stomach
47	chr10:94110600-94114600	Weak transcription	Fetal Intestine Small	intestine
48	chr10:94110600-94115000	Weak transcription	Lung	lung
49	chr10:94110600-94115200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:94110600-94115800	Weak transcription	Pancreas	Pancrea

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