Variant report

Variant	rs11186870
Chromosome Location	chr10:94000310-94000311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93998891..94002756-chr10:94046633..94048810,3	MCF-7	breast:
2	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
3	chr10:94000034..94002806-chr10:94032423..94034711,2	MCF-7	breast:
4	chr10:93993398..93996089-chr10:93999200..94001184,3	K562	blood:
5	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
6	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
7	chr10:93998311..94000738-chr10:94062996..94065016,2	K562	blood:
8	chr10:93997685..94001511-chr10:94048071..94053185,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10509644	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1057848	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs10882030	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882031	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882038	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882044	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186839	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186841	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186842	0.90[ASN][1000 genomes]
rs11186843	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186852	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186856	0.90[CEU][hapmap]
rs11186859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186860	0.91[CEU][hapmap];0.94[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186867	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186868	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186892	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186895	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186896	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186897	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186923	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11186926	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs12355759	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12358721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12358765	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12359038	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421831	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28661623	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781230	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781231	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56239008	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61875203	0.86[ASN][1000 genomes]
rs61875208	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61875210	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61875221	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583802	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583805	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067935	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071524	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073862	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7074059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72807264	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905301	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93997000-94003400	Active TSS	Right Atrium	heart
2	chr10:93997400-94001200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:93997400-94003200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93997800-94001200	Active TSS	Esophagus	oesophagus
5	chr10:93997800-94002400	Active TSS	Left Ventricle	heart
6	chr10:93998000-94001000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr10:93998000-94001200	Active TSS	Pancreas	Pancrea
8	chr10:93998000-94001400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:93998000-94003400	Active TSS	Psoas Muscle	Psoas
10	chr10:93998200-94000600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr10:93998200-94001200	Active TSS	Ovary	ovary
12	chr10:93998200-94003400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr10:93998200-94003400	Active TSS	Right Ventricle	heart
14	chr10:93998400-94001000	Active TSS	Fetal Kidney	kidney
15	chr10:93998600-94000600	Active TSS	Rectal Smooth Muscle	rectum
16	chr10:93998800-94000400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr10:93998800-94000800	Active TSS	Gastric	stomach
18	chr10:93998800-94001000	Active TSS	Brain Hippocampus Middle	brain
19	chr10:93998800-94001200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr10:93998800-94001400	Active TSS	HSMMtube	muscle
21	chr10:93998800-94003400	Active TSS	Brain Angular Gyrus	brain
22	chr10:93999000-94000400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:93999000-94000800	Active TSS	Colon Smooth Muscle	Colon
24	chr10:93999000-94001000	Active TSS	Brain Cingulate Gyrus	brain
25	chr10:93999000-94001000	Active TSS	Fetal Intestine Large	intestine
26	chr10:93999000-94001000	Active TSS	Fetal Stomach	stomach
27	chr10:93999000-94001000	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr10:93999000-94001000	Active TSS	Stomach Mucosa	stomach
29	chr10:93999000-94001200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:93999000-94001200	Active TSS	Aorta	Aorta
31	chr10:93999000-94001200	Active TSS	Brain Anterior Caudate	brain
32	chr10:93999000-94001200	Active TSS	NHDF-Ad	bronchial
33	chr10:93999000-94001400	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr10:93999200-94000400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr10:93999200-94000400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
36	chr10:93999200-94000600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93999200-94000600	Active TSS	Hela-S3	cervix
38	chr10:93999200-94000600	Active TSS	NH-A	brain
39	chr10:93999200-94000800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:93999200-94000800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:93999200-94000800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:93999200-94000800	Active TSS	Fetal Brain Female	brain
43	chr10:93999200-94000800	Active TSS	Fetal Lung	lung
44	chr10:93999200-94000800	Active TSS	Small Intestine	intestine
45	chr10:93999200-94000800	Active TSS	NHLF	lung
46	chr10:93999200-94001000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:93999200-94001000	Active TSS	Fetal Intestine Small	intestine
48	chr10:93999200-94001000	Active TSS	A549	lung
49	chr10:93999200-94001200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr10:93999200-94001200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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