Variant report

Variant	rs3781231
Chromosome Location	chr10:93936664-93936665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10786028	0.82[EUR][1000 genomes]
rs10882023	0.82[EUR][1000 genomes]
rs10882025	0.86[EUR][1000 genomes]
rs10882030	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882031	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882037	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882038	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882044	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186815	0.81[EUR][1000 genomes]
rs11186817	0.81[EUR][1000 genomes]
rs11186822	0.82[EUR][1000 genomes]
rs11186829	0.82[EUR][1000 genomes]
rs11186830	0.83[EUR][1000 genomes]
rs11186835	0.81[EUR][1000 genomes]
rs11186838	0.83[EUR][1000 genomes]
rs11186839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186841	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186842	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186843	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186852	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186859	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186860	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186866	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186867	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186868	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186870	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186875	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186876	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186878	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186879	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186880	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186881	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186884	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186888	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186892	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186894	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186895	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186896	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186897	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186898	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12355759	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12357187	0.81[EUR][1000 genomes]
rs12358721	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12358765	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12359038	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12571139	0.83[EUR][1000 genomes]
rs1539468	0.82[EUR][1000 genomes]
rs1557178	0.82[EUR][1000 genomes]
rs1571176	0.83[EUR][1000 genomes]
rs17107517	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1878424	0.81[EUR][1000 genomes]
rs1935865	0.83[EUR][1000 genomes]
rs2096227	0.81[EUR][1000 genomes]
rs2105364	0.81[EUR][1000 genomes]
rs2185834	0.81[EUR][1000 genomes]
rs2421831	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421874	0.86[EUR][1000 genomes]
rs28661623	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34658839	0.82[EUR][1000 genomes]
rs3781230	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933717	0.82[EUR][1000 genomes]
rs56239008	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56345827	0.83[EUR][1000 genomes]
rs56705680	0.82[EUR][1000 genomes]
rs61875203	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61875208	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61875210	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61875221	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583802	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583805	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66636110	0.82[EUR][1000 genomes]
rs7067935	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069149	0.82[EUR][1000 genomes]
rs7071524	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073862	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7074059	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079499	0.82[EUR][1000 genomes]
rs7084059	0.80[EUR][1000 genomes]
rs7085684	0.82[EUR][1000 genomes]
rs7086446	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7088903	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096357	0.82[EUR][1000 genomes]
rs72807264	0.94[ASN][1000 genomes]
rs746842	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs766398	0.83[EUR][1000 genomes]
rs766399	0.83[EUR][1000 genomes]
rs7905301	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787608	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9794362	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
8	chr10:93927000-93938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
12	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
13	chr10:93927000-93966200	Weak transcription	Ovary	ovary
14	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
16	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
21	chr10:93928600-93942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:93928800-93949000	Weak transcription	Liver	Liver
23	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
24	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:93929600-93938800	Weak transcription	Fetal Stomach	stomach
26	chr10:93930000-93958200	Weak transcription	Hela-S3	cervix
27	chr10:93932400-93940800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:93933000-93940400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:93933200-93941400	Weak transcription	Fetal Heart	heart
30	chr10:93934000-93940400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:93934000-93940600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:93934200-93940200	Weak transcription	Psoas Muscle	Psoas
33	chr10:93934200-93949400	Weak transcription	Lung	lung
34	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:93935600-93940200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:93935600-93941400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:93935800-93938000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:93935800-93940400	Weak transcription	Left Ventricle	heart
39	chr10:93936200-93937400	Strong transcription	Brain Hippocampus Middle	brain
40	chr10:93936400-93939400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:93936400-93941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:93936600-93941200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr10:93936600-93941400	Weak transcription	Fetal Lung	lung
44	chr10:93936600-93958000	Weak transcription	Small Intestine	intestine

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