Variant report

Variant	rs61875203
Chromosome Location	chr10:93888810-93888811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93876707..93879655-chr10:93888247..93891108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214549	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10882030	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882031	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882037	0.83[ASN][1000 genomes]
rs11186839	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186841	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186842	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186843	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186852	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186859	0.86[ASN][1000 genomes]
rs11186860	0.86[ASN][1000 genomes]
rs11186866	0.86[ASN][1000 genomes]
rs11186867	0.86[ASN][1000 genomes]
rs11186868	0.86[ASN][1000 genomes]
rs11186870	0.86[ASN][1000 genomes]
rs11186876	0.81[ASN][1000 genomes]
rs11186878	0.83[ASN][1000 genomes]
rs11186879	0.83[ASN][1000 genomes]
rs11186880	0.83[ASN][1000 genomes]
rs11186881	0.83[ASN][1000 genomes]
rs12358721	0.83[ASN][1000 genomes]
rs2421831	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781230	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781231	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61875208	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61875210	0.86[ASN][1000 genomes]
rs61875221	0.86[ASN][1000 genomes]
rs6583802	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583805	0.83[ASN][1000 genomes]
rs7067935	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071524	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074059	0.80[ASN][1000 genomes]
rs7088903	0.83[ASN][1000 genomes]
rs72807264	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72823192	0.84[AFR][1000 genomes]
rs7905301	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9787608	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:93874600-93899600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:93884400-93890600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:93884800-93896400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:93884800-93896800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:93885200-93891000	Weak transcription	Small Intestine	intestine
8	chr10:93885200-93896200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:93885400-93891200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:93885400-93902000	Weak transcription	NHLF	lung
11	chr10:93885400-93902200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:93885400-93902200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
15	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
16	chr10:93885400-93908400	Weak transcription	Lung	lung
17	chr10:93885600-93897800	Weak transcription	Gastric	stomach
18	chr10:93885600-93902200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:93885800-93896600	Weak transcription	Fetal Stomach	stomach
20	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:93886000-93902000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:93886200-93889600	Weak transcription	Right Atrium	heart
23	chr10:93886200-93896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:93886200-93896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:93886200-93902200	Weak transcription	Brain Anterior Caudate	brain
26	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
27	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
29	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
30	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
31	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:93886400-93890800	Weak transcription	Fetal Heart	heart
33	chr10:93886400-93891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:93886400-93896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:93886400-93901800	Weak transcription	Hela-S3	cervix
36	chr10:93886600-93889400	Weak transcription	HepG2	liver
37	chr10:93887200-93889800	Weak transcription	Liver	Liver
38	chr10:93887400-93902200	Weak transcription	Left Ventricle	heart
39	chr10:93887600-93893400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:93888600-93889000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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