Variant report

Variant	rs7069149
Chromosome Location	chr10:93869858-93869859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93866014..93868686-chr10:93868973..93871759,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10786028	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882025	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186815	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186817	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186818	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186830	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186834	0.83[ASN][1000 genomes]
rs11186835	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186836	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186838	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186839	0.82[EUR][1000 genomes]
rs11186841	0.82[EUR][1000 genomes]
rs11186843	0.82[EUR][1000 genomes]
rs12357187	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557178	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571176	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878424	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935865	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096227	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105364	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2185834	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421831	0.82[EUR][1000 genomes]
rs2421874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34658839	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781230	0.82[EUR][1000 genomes]
rs3781231	0.82[EUR][1000 genomes]
rs3781233	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933712	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933717	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345827	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56705680	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61875208	0.80[EUR][1000 genomes]
rs6583802	0.82[EUR][1000 genomes]
rs66636110	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067935	0.82[EUR][1000 genomes]
rs7071524	0.82[EUR][1000 genomes]
rs7079499	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7084059	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085684	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7086446	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7096357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766398	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766399	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9794362	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93859200-93901400	Weak transcription	Primary B cells from cord blood	blood
4	chr10:93859400-93874800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:93861000-93873600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:93861400-93872600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:93861400-93879000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93862000-93874200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:93862000-93881400	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:93862000-93881400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:93862000-93883200	Weak transcription	Fetal Stomach	stomach
12	chr10:93862600-93870000	Weak transcription	NHLF	lung
13	chr10:93862800-93873200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:93863000-93870000	Weak transcription	Psoas Muscle	Psoas
15	chr10:93863000-93870200	Weak transcription	Primary T cells from cord blood	blood
16	chr10:93863000-93878600	Weak transcription	Gastric	stomach
17	chr10:93863400-93870000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:93863600-93870000	Weak transcription	Small Intestine	intestine
19	chr10:93863800-93879200	Weak transcription	GM12878-XiMat	blood
20	chr10:93863800-93881400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:93863800-93881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:93865600-93870200	Weak transcription	HepG2	liver
23	chr10:93867000-93870600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:93867400-93876200	Weak transcription	Brain Germinal Matrix	brain
25	chr10:93867400-93881800	Weak transcription	Stomach Mucosa	stomach
26	chr10:93867600-93870000	Weak transcription	Brain Angular Gyrus	brain
27	chr10:93867600-93870000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:93867600-93872600	Weak transcription	Fetal Heart	heart
29	chr10:93868000-93870000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:93868000-93870800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:93868000-93871000	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:93868400-93870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:93868400-93874200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:93868800-93870000	Weak transcription	Aorta	Aorta
36	chr10:93868800-93870000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:93868800-93870000	Weak transcription	Pancreas	Pancrea
38	chr10:93868800-93870000	Weak transcription	Right Atrium	heart
39	chr10:93868800-93870000	Weak transcription	Right Ventricle	heart
40	chr10:93868800-93870000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:93868800-93871000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr10:93868800-93871000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:93868800-93871200	Weak transcription	Left Ventricle	heart
44	chr10:93869000-93871600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:93869400-93870000	Enhancers	Brain Substantia Nigra	brain
46	chr10:93869400-93871000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:93869400-93871000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:93869400-93871000	Enhancers	K562	blood
49	chr10:93869400-93871800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:93869400-93871800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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