Variant report

Variant	rs4933712
Chromosome Location	chr10:93816485-93816486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1059515	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10786028	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881998	0.92[CEU][hapmap]
rs10881999	0.92[CEU][hapmap]
rs10882001	0.92[CEU][hapmap]
rs10882002	0.92[CEU][hapmap]
rs10882005	0.92[CEU][hapmap]
rs10882012	0.92[CEU][hapmap]
rs10882015	0.96[CEU][hapmap]
rs10882016	0.92[CEU][hapmap]
rs10882023	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882025	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186749	0.91[CEU][hapmap]
rs11186764	0.92[CEU][hapmap]
rs11186774	0.92[CEU][hapmap]
rs11186783	0.92[CEU][hapmap]
rs11186792	0.88[CEU][hapmap]
rs11186806	0.80[EUR][1000 genomes]
rs11186815	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186817	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186818	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186822	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186829	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186830	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186835	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186836	0.82[ASN][1000 genomes]
rs11186838	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186839	1.00[YRI][hapmap]
rs11527871	0.92[CEU][hapmap]
rs12357187	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12358865	0.92[CEU][hapmap]
rs12359037	0.92[CEU][hapmap]
rs12571139	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1539468	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1557178	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1571176	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1589066	0.81[EUR][1000 genomes]
rs1589067	0.81[EUR][1000 genomes]
rs1878424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1914345	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs1935865	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2096227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105364	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185834	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421874	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34658839	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3781233	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56345827	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56705680	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61185306	0.80[EUR][1000 genomes]
rs61876492	0.80[EUR][1000 genomes]
rs66636110	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7069149	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7079499	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7084059	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7085684	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7086446	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096357	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766398	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766399	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181288	0.92[CEU][hapmap]
rs9794362	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv551923	chr10:93804974-93835969	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
2	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
3	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
5	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:93794400-93837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93795800-93824200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:93796200-93840800	Weak transcription	Psoas Muscle	Psoas
9	chr10:93799200-93824000	Weak transcription	HSMMtube	muscle
10	chr10:93805600-93817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:93806000-93817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:93806000-93819400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:93808000-93816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:93808000-93817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:93808000-93820000	Weak transcription	Fetal Brain Female	brain
16	chr10:93808000-93825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:93808000-93825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:93808000-93842600	Weak transcription	Fetal Lung	lung
19	chr10:93808200-93817200	Weak transcription	Esophagus	oesophagus
20	chr10:93808200-93842800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:93808400-93825400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:93808400-93834400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:93808400-93844400	Weak transcription	Primary T cells from cord blood	blood
24	chr10:93810000-93817800	Strong transcription	Liver	Liver
25	chr10:93812200-93816800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:93812200-93835800	Weak transcription	Aorta	Aorta
27	chr10:93812400-93837800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:93812800-93816800	Weak transcription	Brain Anterior Caudate	brain
29	chr10:93812800-93834600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:93812800-93834800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:93812800-93837200	Weak transcription	Ovary	ovary
32	chr10:93812800-93837800	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:93812800-93837800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:93812800-93838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:93812800-93838800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:93812800-93839800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:93812800-93840600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:93814000-93817600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:93814600-93817200	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr10:93814600-93817400	Strong transcription	Brain Cingulate Gyrus	brain
41	chr10:93814600-93817600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:93814800-93816800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:93815000-93834600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:93815400-93838200	Weak transcription	Primary B cells from cord blood	blood
45	chr10:93815400-93847200	Weak transcription	Hela-S3	cervix
46	chr10:93815600-93817000	Strong transcription	Pancreas	Pancrea
47	chr10:93815600-93817600	Strong transcription	Fetal Stomach	stomach
48	chr10:93815800-93817000	Strong transcription	Gastric	stomach
49	chr10:93815800-93817600	Strong transcription	Fetal Intestine Small	intestine
50	chr10:93815800-93817600	Strong transcription	Spleen	Spleen

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