Variant report

Variant	rs10881999
Chromosome Location	chr10:93687271-93687272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93517264..93519065-chr10:93684545..93687279,2	MCF-7	breast:
2	chr10:93669118..93670759-chr10:93686522..93689005,2	MCF-7	breast:
3	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:
4	chr10:93686308..93687920-chr10:93697752..93699874,2	K562	blood:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1059515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881997	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882000	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882003	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882007	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882009	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882010	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882014	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882015	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186751	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186753	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186771	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186780	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186792	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186805	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186806	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11527871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220586	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12358429	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12358865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12359037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1589066	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1589067	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17362257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2421808	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933712	0.92[CEU][hapmap]
rs61185306	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61876491	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61876492	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8181288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93682800-93689400	Active TSS	GM12878-XiMat	blood
2	chr10:93684200-93688600	Weak transcription	Pancreas	Pancrea
3	chr10:93684200-93691200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:93684200-93691200	Weak transcription	Gastric	stomach
5	chr10:93684200-93691800	Weak transcription	Lung	lung
6	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
7	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
8	chr10:93684400-93691200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93684600-93688200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:93684800-93689000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:93684800-93691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:93685000-93687600	Weak transcription	Fetal Brain Female	brain
15	chr10:93685000-93688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:93685000-93688600	Weak transcription	Right Atrium	heart
17	chr10:93685000-93690000	Weak transcription	Fetal Stomach	stomach
18	chr10:93685000-93690000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:93685000-93690200	Weak transcription	Fetal Intestine Large	intestine
20	chr10:93685000-93690200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:93685000-93690200	Weak transcription	Stomach Mucosa	stomach
22	chr10:93685000-93691200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:93685000-93691200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:93685000-93691200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:93685000-93691200	Weak transcription	Brain Anterior Caudate	brain
26	chr10:93685000-93691200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:93685000-93691200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:93685000-93691200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:93685000-93691200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:93685000-93691200	Weak transcription	Placenta	Placenta
31	chr10:93685000-93691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:93685000-93691400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:93685000-93691400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:93685000-93691400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:93685000-93691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:93685000-93691400	Weak transcription	Fetal Intestine Small	intestine
37	chr10:93685000-93691400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
41	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
44	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
46	chr10:93685200-93689600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:93685200-93690000	Weak transcription	NHDF-Ad	bronchial
48	chr10:93685200-93690200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:93685200-93691200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:93685200-93691200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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