Variant report

Variant	rs10882001
Chromosome Location	chr10:93696699-93696700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93683179..93685181-chr10:93695087..93697562,3	MCF-7	breast:
2	chr10:93682965..93685056-chr10:93695356..93697322,2	K562	blood:
3	chr10:93557196..93559563-chr10:93696607..93698203,2	K562	blood:
4	chr10:93687610..93690997-chr10:93694817..93697493,3	K562	blood:
5	chr10:93696007..93699385-chr10:93701123..93704131,4	MCF-7	breast:
6	chr10:93681420..93686127-chr10:93694549..93698227,7	K562	blood:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1059515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881997	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882000	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882003	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882004	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882009	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882010	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882014	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882015	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186751	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186753	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186771	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186780	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186792	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186805	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186806	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11527871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12358429	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12358865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12359037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1589066	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1589067	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17362257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2421808	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933712	0.92[CEU][hapmap]
rs61185306	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61876491	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61876492	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8181288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
5	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
6	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
7	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93690600-93698600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
11	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
13	chr10:93691000-93697600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:93691400-93698000	Strong transcription	A549	lung
16	chr10:93691400-93698400	Strong transcription	HSMM	muscle
17	chr10:93691400-93702000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:93691800-93696800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:93691800-93707400	Strong transcription	Dnd41	blood
20	chr10:93691800-93716600	Weak transcription	NHLF	lung
21	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:93692200-93697600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:93694000-93697000	Strong transcription	Thymus	Thymus
25	chr10:93694000-93697200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:93694000-93698000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:93694000-93698000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr10:93694000-93698200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:93694000-93698600	Strong transcription	Primary hematopoietic stem cells	blood
30	chr10:93694200-93697000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:93694200-93698000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:93694200-93698600	Strong transcription	Primary B cells from cord blood	blood
33	chr10:93694400-93697000	Strong transcription	Fetal Kidney	kidney
34	chr10:93694400-93698200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:93694400-93704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:93694600-93697000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:93694600-93697400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:93694600-93698800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:93694800-93698600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:93694800-93698600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:93695000-93696800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr10:93695000-93696800	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:93695000-93696800	Strong transcription	HUVEC	blood vessel
44	chr10:93695000-93697200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:93695000-93697200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:93695000-93697200	Strong transcription	Left Ventricle	heart
47	chr10:93695000-93697400	Strong transcription	Fetal Intestine Large	intestine
48	chr10:93695000-93697600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:93695000-93698000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:93695000-93698200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links