Variant report

Variant	rs11186753
Chromosome Location	chr10:93688535-93688536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93687610..93690997-chr10:93694817..93697493,3	K562	blood:
2	chr10:93688393..93689906-chr10:93691732..93693432,2	MCF-7	breast:
3	chr10:93669118..93670759-chr10:93686522..93689005,2	MCF-7	breast:
4	chr10:93682093..93684871-chr10:93687477..93689092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1059515	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881997	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881998	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881999	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882000	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882001	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882002	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882003	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882004	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882005	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882006	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882007	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882009	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882010	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882012	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882014	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882015	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882016	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186749	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186751	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186761	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186764	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186771	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186774	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186780	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186783	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186792	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186805	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11186806	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11527871	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12220586	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12358429	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12358865	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12359037	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1589066	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1589067	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17362257	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914345	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2421808	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61185306	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61876491	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61876492	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8181288	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93682800-93689400	Active TSS	GM12878-XiMat	blood
2	chr10:93684200-93688600	Weak transcription	Pancreas	Pancrea
3	chr10:93684200-93691200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:93684200-93691200	Weak transcription	Gastric	stomach
5	chr10:93684200-93691800	Weak transcription	Lung	lung
6	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
7	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
8	chr10:93684400-93691200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:93684800-93689000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:93684800-93691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:93685000-93688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:93685000-93688600	Weak transcription	Right Atrium	heart
15	chr10:93685000-93690000	Weak transcription	Fetal Stomach	stomach
16	chr10:93685000-93690000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:93685000-93690200	Weak transcription	Fetal Intestine Large	intestine
18	chr10:93685000-93690200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:93685000-93690200	Weak transcription	Stomach Mucosa	stomach
20	chr10:93685000-93691200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:93685000-93691200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93685000-93691200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:93685000-93691200	Weak transcription	Brain Anterior Caudate	brain
24	chr10:93685000-93691200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:93685000-93691200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:93685000-93691200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:93685000-93691200	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:93685000-93691200	Weak transcription	Placenta	Placenta
29	chr10:93685000-93691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:93685000-93691400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:93685000-93691400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:93685000-93691400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:93685000-93691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:93685000-93691400	Weak transcription	Fetal Intestine Small	intestine
35	chr10:93685000-93691400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
39	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
42	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
44	chr10:93685200-93689600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:93685200-93690000	Weak transcription	NHDF-Ad	bronchial
46	chr10:93685200-93690200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:93685200-93691200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:93685200-93691200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:93685200-93691200	Weak transcription	Adipose Nuclei	Adipose
50	chr10:93685200-93691200	Weak transcription	Rectal Mucosa Donor 29	rectum

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