Variant report

Variant	rs10882003
Chromosome Location	chr10:93698699-93698700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93691329..93694139-chr10:93698403..93701302,2	K562	blood:
2	chr10:93682499..93684924-chr10:93698185..93701330,3	MCF-7	breast:
3	chr10:93696007..93699385-chr10:93701123..93704131,4	MCF-7	breast:
4	chr10:93691319..93694139-chr10:93697959..93699903,2	K562	blood:
5	chr10:93698323..93701055-chr10:93702611..93704544,2	K562	blood:
6	chr10:93686308..93687920-chr10:93697752..93699874,2	K562	blood:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1059515	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881997	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881998	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881999	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882000	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882001	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882002	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882004	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882005	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882006	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882007	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882009	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882010	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882012	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882014	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882015	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882016	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186749	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186751	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186753	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186761	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186764	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186771	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186774	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186780	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186783	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186792	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186805	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186806	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11527871	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220586	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12358429	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12358865	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12359037	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1589066	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1589067	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17362257	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914345	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2421808	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61185306	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61876491	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61876492	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8181288	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
5	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
6	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
7	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
10	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
12	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:93691400-93702000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:93691800-93707400	Strong transcription	Dnd41	blood
15	chr10:93691800-93716600	Weak transcription	NHLF	lung
16	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:93694400-93704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:93694600-93698800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:93695000-93702200	Strong transcription	Hela-S3	cervix
21	chr10:93695000-93707000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:93696400-93702200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:93696600-93703600	Weak transcription	Primary T cells from cord blood	blood
25	chr10:93696600-93705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
27	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:93696800-93700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:93696800-93700600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:93696800-93700600	Weak transcription	Ovary	ovary
31	chr10:93696800-93701200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:93696800-93701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:93696800-93701600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:93696800-93701800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:93696800-93701800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:93696800-93701800	Weak transcription	NHEK	skin
37	chr10:93696800-93702000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:93696800-93702400	Weak transcription	HUVEC	blood vessel
39	chr10:93696800-93703600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:93696800-93703600	Weak transcription	Fetal Lung	lung
41	chr10:93696800-93703600	Weak transcription	Gastric	stomach
42	chr10:93696800-93704000	Weak transcription	Brain Anterior Caudate	brain
43	chr10:93696800-93704400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:93696800-93708600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:93696800-93711200	Weak transcription	K562	blood
47	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
50	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart

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