Variant report

Variant	rs10882038
Chromosome Location	chr10:94005134-94005135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94003805..94006713-chr10:94050079..94052421,2	K562	blood:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10882030	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882031	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882037	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882044	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186839	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186841	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186842	0.83[ASN][1000 genomes]
rs11186843	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186852	0.92[ASN][1000 genomes]
rs11186859	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186860	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186866	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186867	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186868	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186870	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186875	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186876	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186878	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186879	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186880	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186881	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186884	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186888	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186892	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186894	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186895	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186896	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186897	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186898	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12355759	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12358721	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12358765	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12359038	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17107517	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421831	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28661623	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781230	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781231	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56239008	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61875208	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61875210	0.92[ASN][1000 genomes]
rs61875221	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583802	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6583805	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7067935	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7071524	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073862	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7074059	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7088903	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72807264	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs746842	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7905301	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9787608	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94000800-94024200	Weak transcription	Gastric	stomach
2	chr10:94003600-94008200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:94003600-94009800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:94004800-94005200	Active TSS	GM12878-XiMat	blood

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